QuasiRecomb

Name: QuasiRecomb
Works on: windows

Windows 2000 and above

Version: 1
Last Updated: 25 Apr 2017
Release: 06 May 2013
Category: Others > Home and Education

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QuasiRecomb Tags

Education Science

QuasiRecomb Details

Rating: 2 out of 5 based on 23 user ratings

Downloads: 158
License: Free

QuasiRecomb is a free software by Armin Topfer and works on Windows 10, Windows 8.1, Windows 8, Windows 7, Windows XP, Windows 2000, Windows 2003, Windows 2008, Windows Vista, Windows 2012.
You can download QuasiRecomb which is 3.85 MB in size and belongs to the software category Home and Education.
QuasiRecomb was released on 2013-05-06 and last updated on our database on 2017-04-25 and is currently at version 1.

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QuasiRecomb Description

QuasiRecomb is a lightweight application that runs in the command console, simulating a Markov model for generating viral Quasispecies. It describes the generation of the viral quasispecies and a method to infer its parameters by analysing next generation sequencing data. The model is validated on simulated data, showing the advantage of explicitly taking the recombination process into account, and tested by applying to reads obtained from experimental HIV samples. It offers an implementation of the EM algorithm to find maximum a posteriori estimates of the model parameters and a method to estimate the distribution of viral strains in the quasispecies.