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Publisher Website: External Link Downloads: 1692 License: Demo / Trial Version
CLC Main Workbench is a demo software by CLC bio and works on Windows 10, Windows 8.1, Windows 8, Windows 7, Windows 2008, Windows Vista, Windows 2012.
You can download CLC Main Workbench which is 112.2 MB in size and belongs to the software category Science CAD. CLC Main Workbench was released on 2014-09-18 and last updated on our database on 2017-04-03 and is currently at version 7.5.
We also have CLC Main Workbench 64bit version which is 116.28 MB in size and will work on x64 computers.
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CLC Main Workbench Description
Expression analysis including digital gene expression
Support for both microarray- and sequencing-based (RNA-Seq) expression data
Visualization: Interactive heat map, table and scatter plot views
Transformation and normalization tools
Quality control tools including principal component analysis, MA- and boxplots
Experimental design tools for two- or multiple group comparisons
T-tests and ANOVA analysis with support for paired/repeated measures
Clustering algorithms: hierarchical clustering, k-means and Partitioning Around Medoids (PAM) with support for various distance and linkage measures.
Ability to import NetAffx annotation arrays and adding annotation to experiments
Tools for Gene Set Enrichment Analysis (GSEA) and for Hyper-Geometric based tests for overrepresented annotation categories (e.g. 'GO'stats or specific protein pathways).
Ability to work with Expression Arrays and RNA-seq results at the same time, enabling comparison of results
DNA sequence analysis
Editor for graphically and algorithmically advanced primer design
In silico PCR
Assembly of DNA sequence data
Multiplexing - Process Tagged Sequences has an option to filter away groups with few sequences.
Molecular cloning
Gateway Cloning
Automatic SNP annotation of sequences
Local complexity region analyses
Reverse translation from protein to gene, based on translation tables from a number of species
Advanced restriction enzyme analysis and management
Dot plot based analyses
DNA statistics report including a number of characteristics of a given molecule
NCBI sequence data search
Access to web info from PubMed
RNA structure analysis
Secondary structure prediction
Graphical view and editing of secondary structure
Tabular view of structures and energy contributions
Symbolic representation in sequence view
Protein sequence analysis
Integrated 3D molecule view
Transmembrane helix prediction
Antigenicity
Secondary protein structure prediction
PFAM domain search
Web-based prediction of signal peptides and their cleavage sites
Hydrophobicity analyses and graphs
Protein charge analysis and graphs
Reverse translation from protein to gene (a number of translation tables)
Interactive translations of DNA and RNA to protein (both single sequences and alignments)
Proteolytic cleavage detection
Report of protein statistics (one or more proteins in each report)
Comprehensive report including a range of protein analyses in one document
Pattern search
Search for sequence matches
Motif search for basic patterns
Motif search using regular expressions
Motif search with ProSite patterns
Pattern discovery (unknown patterns)
Database searches
Web-based sequence search using BLAST
BLAST on local databases
Build local BLAST databases
GenBank Entrez searches
UniProt searches (SwissProt/TrEMBL)
PubMed lookup
Web-based lookup in UniProt, NCBI, and Google
SNP annotation using BLAST
Project and data management
Full integration of data input, data management, calculation results, and data export
Detailed history log
All types of files can be saved in local projects, and launched from the program
Import and export of data in a large number of file formats
Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
Other bioinformatics features
DNA, RNA and protein sequence editor displaying both linear and circular molecules
Multiple alignment of DNA, RNA, and proteins
Two proprietary algorithms
Joining multiple alignments into one
DNA, RNA, and protein alignment editor
Interactive logo graphs along both DNA, RNA and Protein alignments
Batch processing of analyses on multiple sequences in one work-step
Advanced re-alignment and fix-point alignment option
Manual annotation of sequences
Dot plot based analyses
Local complexity region analyses and complexity plots
Gap fraction graphs
G/C content analysis and graphs
Advanced pairwise comparison
Extract annotations
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Last updated price and discount information 7 years agoupdate now
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