Portable UGENE

Name: Portable UGENE
Works on: windows

Windows XP and above

Developer: UniPro

Version: 1.26
Last Updated: 23 Apr 2017
Release: 23 Feb 2017
Category: Portable > Education

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Portable UGENE Tags

genome analysis DNA sequencing program Bioinformatics analyzer Bioinformatics genome analyzer analyze

Portable UGENE Details

Rating: 2.565217391 out of 5 based on 23 user ratings

Publisher Website: External Link
Downloads: 1472
License: Free

Portable UGENE is a free software by UniPro and works on Windows 10, Windows 8.1, Windows 8, Windows 7, Windows XP, Windows 2000, Windows 2003, Windows 2008, Windows Vista, Windows 2012.
You can download Portable UGENE which is 280.08 MB in size and belongs to the software category Education.
Portable UGENE was released on 2017-02-23 and last updated on our database on 2017-04-23 and is currently at version 1.26.
We also have Portable UGENE 64bit version which is 305.33 MB in size and will work on x64 computers.

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Portable UGENE Description

Creating, editing and annotating nucleic acid and protein sequences
Fast search in a sequence
Multiple sequence alignment: ClustalW, ClustalO, MUSCLE, Kalign, MAFFT, T-Coffee
Creating and using a shared storage (e.g.lab database)
Search through online databases: NCBI, PDB, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, DAS servers
Local and NCBI Genbank BLAST search
Open reading frames finder
Restriction enzyme finder with integrated REBASE restriction enzymes list
Integrated Primer3 package for PCR primer design
Plasmid construction and annotation
Cloning in silico by designing of cloning vectors
Genome mapping short reads with Bowtie, BWA and UGENE Genome Aligner
Visualization of next generation sequencing data (BAM files) using UGENE Assembly Browser
Variant calling with SAMtools
RNA-seq data analysis with Tuxedo pipeline (TopHat, Cufflinks, etc.)
ChIP-seq data analysis with Cistrome pipeline (MACS, CEAS, etc.)
Raw NGS data processing
HMMER2 and HMMER3 packages integration
Chromatogram viewer
Search for transcription factor binding sites (TFBS) with weight matrix and SITECON algorithms
Search for direct, inverted and tandem repeats in DNA sequences
Local sequence alignment with optimized Smith-Waterman algorithm
Building (using integrated PHYLIP Neighbor Joining, MrBayes or PhyML Maximum Likelyhood) and editing phylogenetic trees
Combining various algorithms into custom workflows with UGENE Workflow Designer
Contigs assembly with CAP3
3D Structure viewer for files in PDB and MMDB formats, anaglyph view support
Protein secondary structure prediction with GOR IV and PSIPRED algorithms
Constructing dotplots for nucleic acid sequences
mRNA alignment with Spidey
Search for complex signals with ExpertDiscovery
Search for a pattern of various algorithms' results in a nucleic acid sequence with UGENE Query Designer
PCR in silico
Spade de novo assembler

Portable UGENE Screenshots

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