3DiCSI

Name: 3DiCSI
Works on: windows

Windows 7 and above

Developer: Qi Zhao

Version: 1.9
Last Updated: 01 Mar 2017
Release: 19 Feb 2011
Category: Science CAD

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3DiCSI Tags

analyze CSI data CSI data analysis interpret CSI data analysis analyzer analyze CSI data

3DiCSI Details

Works on: Windows 10 | Windows 8.1 | Windows 8 | Windows 7 | Windows 2012
SHA1 Hash: 7cdd88a5bb76def9d073eef302b65b930bc322da
Size: 3.51 MB
File Format: exe

Rating: 1.782608695 out of 5 based on 23 user ratings

Downloads: 1188
License: Free

3DiCSI is a free software by Qi Zhao and works on Windows 10, Windows 8.1, Windows 8, Windows 7, Windows 2012.
You can download 3DiCSI which is 3.51 MB in size and belongs to the software category Science CAD.
3DiCSI was released on 2011-02-19 and last updated on our database on 2017-03-01 and is currently at version 1.9.

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3DiCSI Description

Data Input and Visualization:
Automatic importation of 1D/2D/3D CSI raw data from Philips, GE, Siemens and Bruker scanners.
Any unknown data type can be imported by manually entering parameters.
Any additional formats are also supported through third-party plug-ins.
CSI data and anatomic reference images are registered and displayed in the same window.
Each voxel is displayed in a separate window, its spatial location clearly visualized in the three orthogonal image windows.
3D image reconstruction from images in one orientation.
Multi-dimensional Spectral Data Processing:
Constant phase and linear phase correction.
Temporal filtering ( Lorentzian, Gaussian, or combined).
Spatial smoothing ( Hamming, Cosine, Fermi).
Baseline correction.
Water suppression.
PPM origin adjustment and zero filling.
Lipid Suppression.
Peak alignment.
Batch Processing:
Sequence of processing steps can be recorded in a macro file and applied to the CSI data set.
The same macro file can be applied to a series of exams in a batch mode.
Spectral Localization:
Real-time mouse-facilitated interactive voxel shifting in all 3 dimensions.
Averaging of selected multiple voxels.
Spectral estimation of a user drawn 2D/3D region of interest.
Multi-variate spectral analysis:
Principal Component Analysis (PCA) for user defined spectral region and ROI, to identify Principal Components (PCs) for the variation sources contained in the CSI data set.
PCA-based iterative peak align procedure to remove frequency and phase variations.
Constrained Non-Negative Matrix Factorization (cNMF) method to recover spectral patterns and their spatial distributions that are physically meaningful.
Spectral Quantification:
Metabolic map generation using area integration and PCA.
Map generation for peak ratio and for user defined regions.
Absolute quantification of metabolite concentration using reference spectrum.
Map display scale adjustment to enable comparison between different sets.
Spectral integration with user-controlled baseline correction.
Data Output:
Various result output options, such as HTML format report, CSI slice and image print out, display copy and paste functions, spectral ascii/binary exportation, metabolic image exportation.
Program extensibility:
Plug-in mechanism to support CSI data importation module developed by third-party.

3DiCSI Screenshots

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