JFreq

Name: JFreq
Works on: windows

Windows 7 and above

Version: 1
Last Updated: 02 Mar 2017
Release: 12 Aug 2011
Category: Science CAD

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JFreq Tags

nucleotide sequence sequence analysis analyze sequence sequence nucleotide analysis analyze

JFreq Details

Works on: Windows 10 | Windows 8.1 | Windows 8 | Windows 7 | Windows 2012
SHA1 Hash: 347e87180736bcb28526f84e925c73363783c881
Size: 1.22 KB
File Format: jnlp

Rating: 1.913043478 out of 5 based on 23 user ratings

Downloads: 1152
License: Free

JFreq is a free software by Viral Bioinformatics and works on Windows 10, Windows 8.1, Windows 8, Windows 7, Windows 2012.
You can download JFreq which is 1.22 KB in size and belongs to the software category Science CAD.
JFreq was released on 2011-08-12 and last updated on our database on 2017-03-02 and is currently at version 1.

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JFreq Description

JFreq, short for Java Word Frequencies is designed to be a front-end to Schbaths RMES.
RMES finds the expected and actual frequencies of short nucleotide sequences, or words, using a Markov model to control for the effects of base composition and the frequencies of shorter words.
Unusually frequent or infrequent occurrences of certain words may indicate biological relevance. For example, if the word "TAATTT" occurs much less frequently than expected, it might be that it performs some regulatory function, or makes the sequence vulnerable to mutation or has some other biological function.
RMES can also determine whether words occur in overlapping positions unusually often or unusually rarely, and the expected and actual frequencies of user-supplied words.System requirementsJava

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