STC

Name: STC
Works on: windows

Windows 7 and above

Version: 1.2
Last Updated: 28 Feb 2017
Release: 30 Oct 2010
Category: Science CAD

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1221 downloads

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STC Tags

triplet clustering algorithm reconstruct phylogen phylogen sequence cluster phylogen algorithm reconstruct

STC Details

Works on: Windows 10 | Windows 8.1 | Windows 8 | Windows 7 | Windows 2012
SHA1 Hash: c12ea42a0235932efe7c19063068fa30e034ad50
Size: 237.71 KB
File Format: zip

Rating: 2.478260869 out of 5 based on 23 user ratings

Downloads: 1221
License: Free

STC is a free software by Arndt von Haeseler and works on Windows 10, Windows 8.1, Windows 8, Windows 7, Windows 2012.
You can download STC which is 237.71 KB in size and belongs to the software category Science CAD.
STC was released on 2010-10-30 and last updated on our database on 2017-02-28 and is currently at version 1.2.

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STC Description

The name STC stands for Shortest Triplet Clustering. We propose a new distance-based clustering method, triplet clustering algorithm (STC), to reconstruct phylogenies.
The main idea is the introduction of a natural definition of so-called k-representative sets. Based on k-representative sets, shortest triplets are reconstructed and serve as building blocks for the STC algorithm to agglomerate sequences for tree reconstruction in O(n^2) time for n sequences.
Simulations with 500, 1000 and 5000 sequences data sets show that STC gives better topological accuracy than other methods tested.

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